Identifier Mapping in Cytoscape

BridgeDb app: unifying identifier mapping services for Cytoscape

The BridgeDb app for Cytoscape allows users to map and annotate identifiers of genes, proteins and metabolites in the context of biological networks. The app greatly simplifies the identifier mapping process in Cytoscape by providing a unified interface to different mapping resources and services. The app also provides a programming interface via Cytoscape Commands that can be utilized for iden...

Mapping of TP53 protein network using cytoscape software

TP53 acts as a tumor suppressor in cancer. It induces cell cycle arrest or apoptosis in response to cellular stress and damage. p53 gene alteration could cause uncontrolled cell proliferation.In the present study, we used TP53 gene as the seed in the construction of a protein-protein functional association network to identify genes that might involve in tumorgenesis process with TP53. TP53 prot...

An R package with BridgeDb for identifier mapping

Cytoscape App Store

SUMMARY Cytoscape is an open source software tool for biological network visualization and analysis, which can be extended with independently developed apps. We launched the Cytoscape App Store to highlight the important features that apps add to Cytoscape, enable researchers to find and install apps they need and help developers promote their apps. AVAILABILITY The App Store is available at ...

Efficient DoS-limiting Support by Indirect Mapping in Networks with Locator/Identifier Separation

Recent research in the designing of an elegant mapping service to map identifiers onto locators in networks with locator/identifier separation, focuses on solving practical issues related to mapping system. However, how to provide entire secure support in separation networks is still an open issue. In this paper, we present the design and evaluation of a hierarchical indirect mapping system (HI...